1:pDomains : Benchmark Dataset
Not all of 467 chains have an expert consensus for domain assignments as can be ... benchmark dataset, it is severely biased toward single-domain chains: 318 (85 ...
http://pdomains.sdsc.edu/dataset.php
2:CATH Search
Photosynthetic Reaction Center; Chain H, domain 2. 89. 1rzhH02. 3.90.55 ... Ornithine Decarboxylase; Chain A, domain 4. 3. 1c4kA04. 3.90.105 ...
http://www.cathdb.info/cgi-bin/GotoCath.pl?cath=3.90
3:CATH Search
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2. 50. 1dciA02. 1.10.15 ... Topoisomerase I; Chain A, domain 4. 31. 1k4tA04. 1.10.135 ...
http://www.cathdb.info/cgi-bin/GotoCath.pl?cath=1.10
4:CATH Search
CATH Domain: 1jfzA00. 1jfzA00. PDB 1jfz, Chain A, Domain 0. CATH Code. Level Description ... iii, N-terminal Endonuclease Domain; Chain A. 1.10.1520.10 ...
http://cathwww.biochem.ucl.ac.uk/domain/1jfzA00
5:CATH Search
CATH Domain: 1e7lA02. 1e7lA02. PDB 1e7l, Chain A, Domain 2. CATH ... Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1. 1.10.720.10 ...
http://cathwww.biochem.ucl.ac.uk/domain/1e7lA02
6:InterPro: IPR013315 Spectrin alpha chain, SH3 domain
The European Bioinformatics Institute ... IPR013315 Spectrin alpha chain, SH3 domain 1007 - 1028. IPR002017 Spectrin repeat 1073 - 1179 ...
http://www.ebi.ac.uk/interpro/IEntry?ac=IPR013315
7:pDomains : Consensus Approach
... a part of the single domain chain, agreeing with PDP and DomainParser ... chains, the additional domain evolves from one fragment of a discontinuous ...
http://pdomains.sdsc.edu/approach.php
8:RAIL DOMAIN-Chain Excavation Ballast Clearance
Rail Domain Limited is the provider of 'wet bed' and ballast replacement ... Rail Domain Limited also provides consultancy services to the rail industry, ...
http://www.raildomain.com/index.html
9:BioMed Central | Full text | Improved general regression network for ...
... these methods focus exclusively on predicting boundaries for two-domain chains. ... the relative positioning of two domains within the same chain can vary. ...
http://www.biomedcentral.com/1471-2105/9/S1/S12
10:Santai Domain Resorts
Take advantage of Hotel Club's online specials for huge discounts on the Santai Domain Resorts hotel in Kingscliff, Australia.
http://www.hotelclub.com/Santai_Domain_Resorts
11:SCOP-ified CAFASP results for T0110
Tubulin, C-terminal domain. d1b0aa2. 1.003.053.001 ... domain/chain &nbsp. SCOP superfamily. Superfamily desciption (if not ambiguous) 3UBP ...
http://www.sbg.bio.ic.ac.uk/~3dpssm/pavia/T0110_other_servers.html
12:PDBsum entry: 3bpy
Forkhead transcription factor foxo4, DNA binding domain. Chain: a. Fragment: DNA binding domain. ... structure of the dna binding domain of foxo4 bound to dna. ...
http://www.ebi.ac.uk/pdbsum/3bpy
13:SCOP: Protein: Immunoglobulin heavy chain variable domain, VH from ...
... Immunoglobulin heavy chain variable domain, VH from Mouse ... part of Fab 13B5 against cytokine receptor common beta chain domain 4. complexed with nag ...
http://scop.mrc-lmb.cam.ac.uk/scop-1.65/search-history.cgi?sunid=88552
14:SCOP: Protein: Immunoglobulin heavy chain gamma constant domain 1, CH1 ...
Protein: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma from Mouse (Mus musculus) ... the von willebrand factor (vwf) a1 domain function ...
http://scop.mrc-lmb.cam.ac.uk/scop-1.65/data/scop.b.c.b.b.c.i.html
15:SCOP-ified CAFASP results for T0101
domain/chain &nbsp. SCOP superfamily. Superfamily desciption (if not ambiguous) 190K ... Metalloprotease, C-terminal domain. d1rmg__. 1.002.075.001. Pectin ...
http://www.sbg.bio.ic.ac.uk/~3dpssm/pavia/T0101_other_servers.html
16:Domain Chaining
Not all of 467 chains have an expert consensus for domain assignments as can be ... benchmark dataset, it is severely biased toward single-domain chains: 318 (85 ...
http://www.domainchaining.com/
17:BioMed Central | Full text | Using molecular principal axes for ...
... of the N-terminal FAB heavy chain domain of the complex, from their locations in ... from the interior of the heavy chain domain (to the right in the figures) is ...
http://www.biomedcentral.com/1472-6807/7/77
18:Acid proteases superfamily
dimer of identical mono-domain chains, each containing (6,10) barrel. Pepsin-like [ 50646] (10) ... Click on the 'Domain Combinations' icon. ...
http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF50630
19:3Dee : Chain Page : 1pdnc
Molecule: Prd Paired Domain; Chain: C; Molecule: Dna; Chain: A, B. Author ... [Show alternative domain definitions for this chain] ...
http://www.compbio.dundee.ac.uk/3Dee/c_page/1pdnc.html
20:Domain Insertions
1an9) with or without chain information or SCOP domain or keyword. 2. Browse all entries ... domain insertions based on the number of insert domains seen in a ...
http://www.domins.org/searchmethods.html
21:CATH Updating Procedure June 2001
... processing, is that of handling of multi-domain proteins made up of multi chains. ... Multi-domain chains that will be split into single domains. 6. ...
http://www.biochem.ucl.ac.uk/~chrisby/CATH-updating.html
22:Congress of the International Society on Thrombosis and Haemostasis
... localization of unknown polymerization sites in central domain E of fibrin (f). There is a lot of information that except known complementary polymerization ...
http://www.blackwellpublishing.com/isth2005/abstract.asp?id=46896
23:Abstract: Domain Assignment for Protein Structures using a Consensus ...
... set of 55 protein chains, for which domain assignments from 4 ... In addition, the discontinuity of each domain along the protein chain was considered. ...
http://www.biochem.ucl.ac.uk/~sue/abstract5.html
24:3Dee : Chain Page : 3tf4b
Domain Definitions. Default Definition ... (from 3Dee) : Glycosyltransferases of the superhelical fold Domain II [Show alternative domain definitions for this chain] ...
http://www.compbio.dundee.ac.uk/3Dee/c_page/3tf4b.html
25:Domantis
Domain Antibodies (dAbs) are the smallest functional binding units of antibodies, ... regions of either the heavy (VH) or light (VL) chains of human antibodies. ...
http://www.domantis.com/domain.htm
26:Cj0279: cjejuni : GeneDB
Cj0279; carbamoyl-phosphate synthase large chain ... Carbamoyl-phosphate synthase L chain, N-terminal domain ... synthetase large chain, oligomerisation domain ...
http://www.genedb.org/genedb/Search?name=Cj0279&organism=cjejuni
27:TK C-terminal domain-like superfamily
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain [ 52926] (3) ... Structural studies reveal this domain to comprise of three layers ...
http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF52922
28:caps.ncbs.res.in/ddbase
DDBASE (DIAL-derived domain database) - A database of Globular domains derived ... Total number of protein chains : 4151. Number of protein domains : 6314 ...
http://caps.ncbs.res.in/ddbase/
29:Solid-Phase Synthesis of an A-B Loop Mimetic of the CE3 Domain
... Ω-loop regions in the C 3 domain of hIgE. ... concomitant side-chain deprotection to ... chain deprotection were effected by treatment with a mixture ...
http://www.ch.ic.ac.uk/spivey/publicationpdfs/jorgchem2003681843.pdf
30:Domain Insertions
3) How does one identify domain insertions? ... We excluded mono-domain proteins and considered chains which have at least two domains in them. ...
http://www.domins.org/faq.html
31:atpC: ecarot : GeneDB
atpC; ATP synthase epsilon chain ... ATP synthase, Delta/Epsilon chain, long alpha-helix domain ... Delta/Epsilon chain, beta-sandwich domain, score 4.5e-36 ...
http://www.genedb.org/genedb/Search?organism=ecarot&name=ECA4511
32:non-muscle Myosin IIA antibody (ab24762) datasheet | Abcam
... myosin composed of an N-terminal motor domain, a light chain binding neck regi... motor domain, a light chain binding neck region, a coiled-coil region, ...
http://www.abcam.com/index.html?datasheet=24762
33:Nuclear Protein Database (NPD): Protein Domains
FES - iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase ... D : - DNA-directed RNA polymerase subunit D and bacterial alpha chain PFAM SMART ...
https://npd.hgu.mrc.ac.uk/domains.html
34:Citebase - A protein domain interaction interface database: InterPare
... large-scale protein domain interaction interface database ... chain domain-domain interaction interfaces and 12,758 intra-chain domain-domain interfaces. ...
http://www.citebase.org/abstract?id=oai%3Abiomedcentral.com%3A1471-2105-6-207
35:Congress of the International Society on Thrombosis and Haemostasis
... of factor VIII binding to phospholipids by single-chain variable domain ... used to isolate single-chain variable domain fragments (scFv) from a patient ...
http://www.blackwellpublishing.com/isth2003/abstract.asp?id=9240
36:Interactions of the complete cellobiohydrolase I from Trichodera reesei ...
domain over the central two chains of the (1,0,0) ... portion of this chain (near the binding domain) ... the very flexible linker domain chain can store energy ...
http://www.rosswalker.co.uk/papers/Cellulose_2008_15_261-273.pdf
37:GenDiS
Align your sequence with the genome of a given superfamily using CLUSTALW [Help] ... Click here for genome list] Paste your set of amino acid sequences in PIR format: ...
http://caps.ncbs.res.in/gendis/align2.html
38:Capping Enzyme
... are many hydrogen bonds between the entire triphosphate chain and both domain ... In addition, domain closure brings negatively charged residues from both domains ...
http://sci.cancerresearchuk.org/labs/wigley/projects/cap/capstruct.html
39:pre-SCOP - Protein: N-terminal domain of eukaryotic peptide chain ...
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (55480) alpha-beta-alpha(2)-beta(3)-alpha; 3 layers a/b/a; antiparallel beta-sheet: 4123 ...
http://www.mrc-lmb.cam.ac.uk/agm/pre-scop/55483.html
40:pre-SCOP - Protein: Large chain TOA1, N-terminal domain (88833)
Transcription factor IIA (TFIIA), alpha-helical domain (47395) ... Protein. Large chain TOA1, N-terminal domain (88833) Species Children ...
http://www.mrc-lmb.cam.ac.uk/agm/pre-scop/88833.html
'domain chaining'
